Notices
RX - 5th Gen (2023-present) Discussion topics related to the 2023 and up RX models

shift system malfunction error on startup

Thread Tools
 
Search this Thread
 
Old Dec 23, 2024 | 01:02 PM
  #1  
lexusnyca's Avatar
lexusnyca
Thread Starter
Instructor
Liked
Loved
Community Favorite
 
Joined: Aug 2022
Posts: 1,246
Likes: 459
From: NY
Default shift system malfunction error on startup

Has anyone else ever gotten this "Shift System Malfunction" error on the cluster after starting their car? It's happened to me twice now, on these coldest of mornings. It's the least severe of the possible shifter error messages according to the manual, it doesn't say anything about putting the car on level ground or applying the parking brake. It goes away once you restart the car. It seems to be related to the cold weather, is it indicating the gearbox is too cold to shift before the car has a chance to warm it up? A trip to the dealer service this week isn't too practical with the holidays and all. Going to warm up the next couple days in NY, let's see if ir re-occurs.
Reply
Old Dec 23, 2024 | 02:14 PM
  #2  
John89's Avatar
John89
Intermediate
 
Joined: Mar 2023
Posts: 403
Likes: 170
From: New York
Default

Have you gotten software update? Update related VVT locking pin? This may be reason, as VVT locks for the first few seconds to warm the car, but due to issue it may stay engaged. Not sure if it would cause shift error as it says MIL (Check engine)
Reply
Old Dec 23, 2024 | 04:37 PM
  #3  
lexusnyca's Avatar
lexusnyca
Thread Starter
Instructor
Liked
Loved
Community Favorite
 
Joined: Aug 2022
Posts: 1,246
Likes: 459
From: NY
Default

No check engine light. Supposed to be over 30 degrees tomorrow morning, I am betting I don't see it.
Reply
Old Dec 23, 2024 | 08:15 PM
  #4  
BLUKTY2's Avatar
BLUKTY2
Pit Crew
Liked
Loved
Community Favorite
Top Answer: 1
 
Joined: Jun 2023
Posts: 202
Likes: 156
From: Alaska
Default

I have gotten that message several times over the past 16 months or so since I bought my RX. It has only happened when it was around 10* F or colder. When I asked the local dealership service advisor about the message, he just brushed it off and said it was due to the cold temperatures; didn't seemed concerned about it whatsoever. Every time that this message appeared the car drove fine and the message eventually went away.

I have recently gotten the VVT locking pin software update and have not seen the "Shift System Malfunction" message since then, but the outside air temperatures have been very mild so I really don't know if the update solved this issue or not.

The bottom line is I don't think that you have anything to worry about, but of course these messages are definitely a little concerning at best.
Reply
Old Dec 24, 2024 | 06:26 AM
  #5  
lexusnyca's Avatar
lexusnyca
Thread Starter
Instructor
Liked
Loved
Community Favorite
 
Joined: Aug 2022
Posts: 1,246
Likes: 459
From: NY
Default

Mild in Alaska? Anyway, thanks for the tip, I will get to the dealer after the holidays.
Reply
Old Dec 24, 2024 | 09:26 AM
  #6  
BLUKTY2's Avatar
BLUKTY2
Pit Crew
Liked
Loved
Community Favorite
Top Answer: 1
 
Joined: Jun 2023
Posts: 202
Likes: 156
From: Alaska
Default

Yep, staying around 28-34* F for days (weeks?) lately. Not uncommon.

I am curious to know what your dealer says about the issue and would appreciate a follow-up report if you don't mind!
Reply
Old Dec 24, 2024 | 06:08 PM
  #7  
Raven67's Avatar
Raven67
Pit Crew
Photogenic
Liked
Loved
Community Favorite
 
Joined: Dec 2024
Posts: 118
Likes: 115
From: Kentucky
Default

My question is, do you have your parking brake to set whenever you put it in park? Or not? When I bought ours, the dealer had it set to whenever you pushed the park button, the parking brake automatically activated. I turned it off since we always park in a level garage & don't really need it. But wondered if I parked on a hill without it, would it put the parking pawl in transmission in a binding & cause that exact issue.
Reply
Old Dec 25, 2024 | 04:20 AM
  #8  
Urlik's Avatar
Urlik
Racer
Liked
Loved
Community Favorite
 
Joined: Mar 2023
Posts: 1,594
Likes: 899
From: TX
Default

Originally Posted by John89
Have you gotten software update? Update related VVT locking pin? This may be reason, as VVT locks for the first few seconds to warm the car, but due to issue it may stay engaged. Not sure if it would cause shift error as it says MIL (Check engine)
VVT locks because there is no oil pressure to the cam phaser which would allow it to slap around back and forth internally. It’s locked until oil pressure is adequate.
Reply
ClubLexus Stories

Celebrating Lexus & Toyota from Around the Globe

story-0

10 Lexus Designs That Have Aged Like Fine Wine

 Verdad Gallardo
story-1

8 Tips for Improving Your Hybrid or Plug-in Hybrid's Efficiency!

 Michael S. Palmer
story-2

10 Best Lexus Models No One Remembers

 Joe Kucinski
story-3

TRD Off-Road Premium: Best 2026 4Runner, Except This One Thing

 Michael S. Palmer
story-4

Top 10 Lexus & Toyotas to Drive Before You Die!

 Joe Kucinski
story-5

Top 10 Lexus/Toyotas With The LEAST 5-Year Depreciation

 Joe Kucinski
story-6

Lexus LC500 Convertible Auction: A Preview of Rising Values?

 Brett Foote
story-7

GX 550 vs TX 550: Best 3-Row Luxury Lexus Family Hauler

 Michael S. Palmer
story-8

9 Best Lexus Models You Can Buy for Half Price (And 1 You Shouldn't!)

 Joe Kucinski
story-9

2026 Lexus NX Buyer's Guide: Models, Features, Prices & More!

 Brett Foote
Old Dec 27, 2024 | 07:14 AM
  #9  
menphix's Avatar
menphix
9th Gear
 
Joined: Dec 2022
Posts: 9
Likes: 4
From: VA
Default

I've seen it once or twice during cold morning starts. Every time turning the car off and back on again makes the message go away.
I have done the "VVT locking pin software update" but I still see it.
Reply
Old Dec 27, 2024 | 07:27 AM
  #10  
Urlik's Avatar
Urlik
Racer
Liked
Loved
Community Favorite
 
Joined: Mar 2023
Posts: 1,594
Likes: 899
From: TX
Default

A VVT locking pin error would give a check engine light due to valves opening/closing not at the expected times in the combustion cycle. It would not give a shift system malfunction error.
Reply
Old Dec 29, 2024 | 03:11 PM
  #11  
CAPTBob's Avatar
CAPTBob
Driver
20 Year Member
 
Joined: Mar 2003
Posts: 59
Likes: 72
From: Michigan
Default

I had this fault yesterday on my wife's 2023 RX (Gas). It was very mild for December here in Michigan, about 55F, so I don't think it was caused by cold temperatures. The car had been sitting undriven in the garage for a week over the holidays before we took it out to go to the movies (Off topic, but the Bob Dylan movie, "A Complete Unknown," was very good). The shift system malfunction fault alert came as soon as I backed out of the garage and it didn't clear in the 6 miles to the movie theater. On the way there I noticed that the auto-stop/start never engaged at stoplights. After the movie the fault did not reappear upon startup and driving home. So, I'm wondering if maybe one of the causes of the car throwing this fault is a low battery since the car had sat undriven for a week.
Reply
Old Dec 29, 2024 | 07:22 PM
  #12  
BLUKTY2's Avatar
BLUKTY2
Pit Crew
Liked
Loved
Community Favorite
Top Answer: 1
 
Joined: Jun 2023
Posts: 202
Likes: 156
From: Alaska
Default

In my situation I don't believe that a low battery voltage causes this message to appear as the car is driven almost daily, but I suppose that it is a possibility. Low temperature (in my case) or sitting for a week (your case) = lower performance of a FLA battery = shift system malfunction notification?

Again, I suppose that it is possible, since we don't know what is causing this message to appear, but I really don't think that battery condition is causing this message.

Curious to know what your local dealer has to say about this should you choose to pursue this with them.

Reply
Old Dec 30, 2024 | 07:50 AM
  #13  
lexusnyca's Avatar
lexusnyca
Thread Starter
Instructor
Liked
Loved
Community Favorite
 
Joined: Aug 2022
Posts: 1,246
Likes: 459
From: NY
Default

Funny you mention the low battery condition - I wasn't using the car during the period of very cold temps here in the NE, and later when it warmed up - the shift error was gone, but the car was asking me for a PIN number (which I didn't know) so I had to go through a PIN reset procedure through the head unit and the app. I assume this PIN reset was due to the battery being undercharged during the idle period of cold weather - however the car did start right up.
Reply
Old Dec 30, 2024 | 08:07 PM
  #14  
BLUKTY2's Avatar
BLUKTY2
Pit Crew
Liked
Loved
Community Favorite
Top Answer: 1
 
Joined: Jun 2023
Posts: 202
Likes: 156
From: Alaska
Default

I think that at this point, since we have no idea what is causing this message to appear, we all keep an open mind as to what could be causing it. This being said, I agree with @Urlik that the VVT software update or lack thereof has nothing to do with the message. See post #10.

From what I have learned over the years, I believe that low voltage in the electrical systems of modern vehicles can wreak all sorts of havoc. The more that I have thought about this, the more plausible it seems that this may be the cause. @lexusnyca , your PIN reset validates this IMHO; your battery got discharged to the point that it still started the vehicle, but other things/systems were affected.

Perhaps an interesting experiment would be to hook up a battery trickle charger when cold temperatures and/or prolonged storage is expected and see if this keeps the message away. I will try this approach when I have an opportunity and report back.
Reply
Old Jan 4, 2025 | 11:01 AM
  #15  
BLUKTY2's Avatar
BLUKTY2
Pit Crew
Liked
Loved
Community Favorite
Top Answer: 1
 
Joined: Jun 2023
Posts: 202
Likes: 156
From: Alaska
Default

Back with an update.

The past two mornings have been fairly cold, between 0 and 5* F. I drove the car on both of these days and I fully expected to see the shift system malfunction notification as I had in the past at these temperatures. The notification never appeared.

I'm really not sure what to think at this point.
Reply



All times are GMT -7. The time now is 10:42 PM.

story-0
10 Lexus Designs That Have Aged Like Fine Wine

Slideshow: Some luxury cars chase trends, but these Lexus models look better now than they did when they first rolled into showrooms.

By Verdad Gallardo | 2026-05-06 17:58:29


VIEW MORE
story-1
8 Tips for Improving Your Hybrid or Plug-in Hybrid's Efficiency!

Slideshow: How to Get the Best Fuel Economy with a Hybrid and Plug-In Hybrid!

By Michael S. Palmer | 2026-05-05 20:54:44


VIEW MORE
story-2
10 Best Lexus Models No One Remembers

Slideshow: 10 best Lexus models no one remembers.

By Joe Kucinski | 2026-05-05 17:33:28


VIEW MORE
story-3
TRD Off-Road Premium: Best 2026 4Runner, Except This One Thing

Slideshow: diving into 4Runner TRD Off-Road Premium's pricing, performance, fuel economy, features, and amenities!

By Michael S. Palmer | 2026-04-23 13:09:18


VIEW MORE
story-4
Top 10 Lexus & Toyotas to Drive Before You Die!

Slideshow: the 10 Lexus and Toyota vehicles you need to drive before you die.

By Joe Kucinski | 2026-04-23 10:34:24


VIEW MORE
story-5
Top 10 Lexus/Toyotas With The LEAST 5-Year Depreciation

Slideshow: Top 10 Lexus/Toyota models with the lowest 5-year depreciation rate.

By Joe Kucinski | 2026-04-08 12:19:06


VIEW MORE
story-6
Lexus LC500 Convertible Auction: A Preview of Rising Values?

The LC hasn't even disappeared from the Lexus lineup yet, and we're already seeing signs of an explosive market.

By Brett Foote | 2026-04-06 09:25:02


VIEW MORE
story-7
GX 550 vs TX 550: Best 3-Row Luxury Lexus Family Hauler

Slideshow: comparing the pricings, specs, power, fuel economy, fun-factor, and features of the GX 550 Luxury+ and TX 550h+ Luxury.

By Michael S. Palmer | 2026-03-19 13:44:11


VIEW MORE
story-8
9 Best Lexus Models You Can Buy for Half Price (And 1 You Shouldn't!)

Slideshow: 9 best Lexus models you can buy for half price and 1 you should avoid

By Joe Kucinski | 2026-03-19 12:01:07


VIEW MORE
story-9
2026 Lexus NX Buyer's Guide: Models, Features, Prices & More!

Here's everything you need to know about the latest NX.

By Brett Foote | 2026-03-19 11:56:59


VIEW MORE