I changed the battery in my 2010 LS460 and I lost the ability to raise and lower the non driver windows from the driver's position. To fix this, l learned you just lower each window all the way and hold the button for a second or so after lowering it. Then you raise the window and hold the button again for a second or so. Worked great.

 

had the same issue on my GS when they installed coil overs with EDFC they had to disconnect the battery. I get in all excited for the new drop and go to roll my windows down and nothing. Took the tech about 2 seconds to figure it out