Ok, I'm a bone head. Let's get that out of the way first.

On the distributor for my 95 SC300 there are 2 screws under that cap that say "DO NOT REMOVE." Well, I removed them by accident. Anyonw know know what these do and if I can just put them back. I have moved the distributor since their removal. They were removed a while ago and I'm just now getting around to putting the SC back together.

 

I would put them back...om fairly certain I removed everything near the distributor when I was new to the car.

 

You should be fine. Just make sure the bolt is torqued to spec (I think that might be why it says do not remove)